Functional annotation for 15 diverse arthropod genomes
Principal Investigator(s): View help for Principal Investigator(s) US Department of Agriculture; National Agricultural Library
Version: View help for Version V1
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Project Citation:
US Department of Agriculture, and National Agricultural Library. Functional annotation for 15 diverse arthropod genomes. Ann Arbor, MI: Inter-university Consortium for Political and Social Research [distributor], 2026-06-27. https://doi.org/10.3886/E250473V1
Project Description
Project Title:
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Functional annotation for 15 diverse arthropod genomes
Summary:
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We present the annotation results of 15 arthropod proteomes using an open source, open access and containerized pipeline for genome-scale functional annotation of insect proteomes and apply it to a diverse range of arthropod species. You can find more information about the pipeline at our readthedocs site. The files for each genome include GOanna, InterproScan and KOBAS predictions.
Arthropod genomes selected for this study and their assembly and annotation statistics.
Apis Mellifera (honey bee)
Drosophila melanogaster (fruit fly)
Tribolium castaneum (red flour beetle)
Latrodectus hesperus (Western black widow spider)
Limnephilus lunatus (caddisfly)
Oncopeltus fasciatus (Large milkweed bug)
Homalodisca vitripennis (Glassy-winged sharpshooter)
Eurytemora affinis (calanoid copepod)
Agrilus planipennis (emerald ash borer)
Copidosoma floridanum (parasitoid wasp)
Athalia rosae (turnip sawfly)
Ceratitis capitata (Mediterranean fruit fly)
Cimex lectularius (Cimicidae bed bug)
Varroa destructor(parasitic mite)
Diaphorina citri (Asian citrus psyllid)
Resources in this dataset:
Diaphorina citri (Asian citrus psyllid)
Resources in this dataset:
Resource Title: Cimex lectularius (Cimicidae bed bug) annotation. File Name: CLEC.tar.gzResource Description: Functional annotation for Clec-OGSv1.2 protein set
Resource Title: Cimex lectularius (Cimicidae bed bug) annotation.
File Name: CLEC.tar.gz
Resource Description: Functional annotation for Clec-OGSv1.2 protein set
Resource Title: Tribolium castaneum (red flour beetle) annotation. File Name: TCAS.tar.gzResource Description: Functional annotation for TCAS_OGS_v3 protein set
Resource Title: Tribolium castaneum (red flour beetle) annotation.
File Name: TCAS.tar.gz
Resource Description: Functional annotation for TCAS_OGS_v3 protein set
Resource Title: Drosophila melanogaster (fruit fly) annotation. File Name: DMEL.tar.gzResource Description: Functional annotation for DMEL_r6.38 protein set
Resource Title: Drosophila melanogaster (fruit fly) annotation.
File Name: DMEL.tar.gz
Resource Description: Functional annotation for DMEL_r6.38 protein set
Resource Title: Varroa destructor (parasitic mite) annotation. File Name: VDES.tar.gzResource Description: Functional annotation for NCBI Varroa destructor Annotation Release 100 protein set based on Vdes_3.0 genome (GCA_002443255.1)
Resource Title: Varroa destructor (parasitic mite) annotation.
File Name: VDES.tar.gz
Resource Description: Functional annotation for NCBI Varroa destructor Annotation Release 100 protein set based on Vdes_3.0 genome (GCA_002443255.1)
Resource Title: Oncopeltus fasciatus (Large milkweed bug) annotation. File Name: ONCFAS.tar.gzResource Description: Functional annotation for oncfas_OGSv1.2 protein set
Resource Title: Oncopeltus fasciatus (Large milkweed bug) annotation.
File Name: ONCFAS.tar.gz
Resource Description: Functional annotation for oncfas_OGSv1.2 protein set
Resource Title: Apis Mellifera (honey bee) annotation. File Name: AMEL.tar.gzResource Description: Functional annotation for OGSv3.3 protein set from Amel_4.5 genome (GCA_000002195.1)
Resource Title: Apis Mellifera (honey bee) annotation.
File Name: AMEL.tar.gz
Resource Description: Functional annotation for OGSv3.3 protein set from Amel_4.5 genome (GCA_000002195.1)
Resource Title: Homalodisca vitripennis (Glassy-winged sharpshooter) annotation. File Name: HVIT.tar.gzResource Description: Functional annotation for HVIT-BCM_version_0.5.3 protein set based on Hvit_1.0 genome (GCA_000696855.1)
Resource Title: Homalodisca vitripennis (Glassy-winged sharpshooter) annotation.
File Name: HVIT.tar.gz
Resource Description: Functional annotation for HVIT-BCM_version_0.5.3 protein set based on Hvit_1.0 genome (GCA_000696855.1)
Resource Title: Limnephilus lunatus (caddisfly) annotation. File Name: LLUN.tar.gzResource Description: Functional annotation for LLUN-BCM_version_0.5.3 protein set from Llun_1.0 genome (GCA_000648945.1)
Resource Title: Limnephilus lunatus (caddisfly) annotation.
File Name: LLUN.tar.gz
Resource Description: Functional annotation for LLUN-BCM_version_0.5.3 protein set from Llun_1.0 genome (GCA_000648945.1)
Resource Title: Latrodectus hesperus (Western black widow spider) annotation. File Name: LHES.tar.gzResource Description: Functional annotation for LHES-BCM_version_0.5.3 protein set from Lhes_1.0 genome (GCA_000697925.1)
Resource Title: Latrodectus hesperus (Western black widow spider) annotation.
File Name: LHES.tar.gz
Resource Description: Functional annotation for LHES-BCM_version_0.5.3 protein set from Lhes_1.0 genome (GCA_000697925.1)
Resource Title: Eurytemora affinis (calanoid copepod) annotation. File Name: EAFF.tar.gzResource Description: Functional annotation for EAFF-BCM_version_0.5.3 protein set from Eaff_1.0 genome (GCA_000591075.1)
Resource Title: Eurytemora affinis (calanoid copepod) annotation.
File Name: EAFF.tar.gz
Resource Description: Functional annotation for EAFF-BCM_version_0.5.3 protein set from Eaff_1.0 genome (GCA_000591075.1)
Resource Title: Copidosoma floridanum (parasitoid wasp) annotation. File Name: CFLO.tar.gzResource Description: Functional annotation for CFLO-BCM_version_0.5.3 protein set based on Cflo_1.0 genome (GCA_000648655.1)
Resource Title: Copidosoma floridanum (parasitoid wasp) annotation.
File Name: CFLO.tar.gz
Resource Description: Functional annotation for CFLO-BCM_version_0.5.3 protein set based on Cflo_1.0 genome (GCA_000648655.1)
Resource Title: Ceratitis capitata (Mediterranean fruit fly) annotation. File Name: CCAP.tar.gzResource Description: Functional annotation for Ccap-OGSv1 protein set based on Ccap_1.1 assembly (GCA_000347755.2)
Resource Title: Ceratitis capitata (Mediterranean fruit fly) annotation.
File Name: CCAP.tar.gz
Resource Description: Functional annotation for Ccap-OGSv1 protein set based on Ccap_1.1 assembly (GCA_000347755.2)
Resource Title: Athalia rosae (turnip sawfly) annotation. File Name: AROS.tar.gzResource Description: Functional annotation for AROS-BCM_version_0.5.3 protein set based on Aros_1.0 genome (GCA_000344095.1)
Resource Title: Athalia rosae (turnip sawfly) annotation.
File Name: AROS.tar.gz
Resource Description: Functional annotation for AROS-BCM_version_0.5.3 protein set based on Aros_1.0 genome (GCA_000344095.1)
Resource Title: Agrilus planipennis (emerald ash borer) annotation. File Name: APLA.tar.gzResource Description: Functional annotation for APLA-BCM_version_0.5.3 protein set based on Apla_1.0 genome (GCA_000699045.1)
Resource Title: Agrilus planipennis (emerald ash borer) annotation.
File Name: APLA.tar.gz
Resource Description: Functional annotation for APLA-BCM_version_0.5.3 protein set based on Apla_1.0 genome (GCA_000699045.1)
Arthropod genomes selected for this study and their assembly and annotation statistics.
Apis Mellifera (honey bee)
Drosophila melanogaster (fruit fly)
Tribolium castaneum (red flour beetle)
Latrodectus hesperus (Western black widow spider)
Limnephilus lunatus (caddisfly)
Oncopeltus fasciatus (Large milkweed bug)
Homalodisca vitripennis (Glassy-winged sharpshooter)
Eurytemora affinis (calanoid copepod)
Agrilus planipennis (emerald ash borer)
Copidosoma floridanum (parasitoid wasp)
Athalia rosae (turnip sawfly)
Ceratitis capitata (Mediterranean fruit fly)
Cimex lectularius (Cimicidae bed bug)
Varroa destructor(parasitic mite)
Diaphorina citri (Asian citrus psyllid)
Resources in this dataset:
- Resource Title: Cimex lectularius (Cimicidae bed bug) annotation. File Name: CLEC.tar.gzResource Description: Functional annotation for Clec-OGSv1.2 protein set
- Resource Title: Tribolium castaneum (red flour beetle) annotation. File Name: TCAS.tar.gzResource Description: Functional annotation for TCAS_OGS_v3 protein set
- Resource Title: Drosophila melanogaster (fruit fly) annotation. File Name: DMEL.tar.gzResource Description: Functional annotation for DMEL_r6.38 protein set
Diaphorina citri (Asian citrus psyllid)
Resources in this dataset:
Resource Title: Cimex lectularius (Cimicidae bed bug) annotation. File Name: CLEC.tar.gzResource Description: Functional annotation for Clec-OGSv1.2 protein set
Resource Title: Cimex lectularius (Cimicidae bed bug) annotation.
File Name: CLEC.tar.gz
Resource Description: Functional annotation for Clec-OGSv1.2 protein set
Resource Title: Tribolium castaneum (red flour beetle) annotation. File Name: TCAS.tar.gzResource Description: Functional annotation for TCAS_OGS_v3 protein set
Resource Title: Tribolium castaneum (red flour beetle) annotation.
File Name: TCAS.tar.gz
Resource Description: Functional annotation for TCAS_OGS_v3 protein set
Resource Title: Drosophila melanogaster (fruit fly) annotation. File Name: DMEL.tar.gzResource Description: Functional annotation for DMEL_r6.38 protein set
Resource Title: Drosophila melanogaster (fruit fly) annotation.
File Name: DMEL.tar.gz
Resource Description: Functional annotation for DMEL_r6.38 protein set
Resource Title: Varroa destructor (parasitic mite) annotation. File Name: VDES.tar.gzResource Description: Functional annotation for NCBI Varroa destructor Annotation Release 100 protein set based on Vdes_3.0 genome (GCA_002443255.1)
Resource Title: Varroa destructor (parasitic mite) annotation.
File Name: VDES.tar.gz
Resource Description: Functional annotation for NCBI Varroa destructor Annotation Release 100 protein set based on Vdes_3.0 genome (GCA_002443255.1)
Resource Title: Oncopeltus fasciatus (Large milkweed bug) annotation. File Name: ONCFAS.tar.gzResource Description: Functional annotation for oncfas_OGSv1.2 protein set
Resource Title: Oncopeltus fasciatus (Large milkweed bug) annotation.
File Name: ONCFAS.tar.gz
Resource Description: Functional annotation for oncfas_OGSv1.2 protein set
Resource Title: Apis Mellifera (honey bee) annotation. File Name: AMEL.tar.gzResource Description: Functional annotation for OGSv3.3 protein set from Amel_4.5 genome (GCA_000002195.1)
Resource Title: Apis Mellifera (honey bee) annotation.
File Name: AMEL.tar.gz
Resource Description: Functional annotation for OGSv3.3 protein set from Amel_4.5 genome (GCA_000002195.1)
Resource Title: Homalodisca vitripennis (Glassy-winged sharpshooter) annotation. File Name: HVIT.tar.gzResource Description: Functional annotation for HVIT-BCM_version_0.5.3 protein set based on Hvit_1.0 genome (GCA_000696855.1)
Resource Title: Homalodisca vitripennis (Glassy-winged sharpshooter) annotation.
File Name: HVIT.tar.gz
Resource Description: Functional annotation for HVIT-BCM_version_0.5.3 protein set based on Hvit_1.0 genome (GCA_000696855.1)
Resource Title: Limnephilus lunatus (caddisfly) annotation. File Name: LLUN.tar.gzResource Description: Functional annotation for LLUN-BCM_version_0.5.3 protein set from Llun_1.0 genome (GCA_000648945.1)
Resource Title: Limnephilus lunatus (caddisfly) annotation.
File Name: LLUN.tar.gz
Resource Description: Functional annotation for LLUN-BCM_version_0.5.3 protein set from Llun_1.0 genome (GCA_000648945.1)
Resource Title: Latrodectus hesperus (Western black widow spider) annotation. File Name: LHES.tar.gzResource Description: Functional annotation for LHES-BCM_version_0.5.3 protein set from Lhes_1.0 genome (GCA_000697925.1)
Resource Title: Latrodectus hesperus (Western black widow spider) annotation.
File Name: LHES.tar.gz
Resource Description: Functional annotation for LHES-BCM_version_0.5.3 protein set from Lhes_1.0 genome (GCA_000697925.1)
Resource Title: Eurytemora affinis (calanoid copepod) annotation. File Name: EAFF.tar.gzResource Description: Functional annotation for EAFF-BCM_version_0.5.3 protein set from Eaff_1.0 genome (GCA_000591075.1)
Resource Title: Eurytemora affinis (calanoid copepod) annotation.
File Name: EAFF.tar.gz
Resource Description: Functional annotation for EAFF-BCM_version_0.5.3 protein set from Eaff_1.0 genome (GCA_000591075.1)
Resource Title: Copidosoma floridanum (parasitoid wasp) annotation. File Name: CFLO.tar.gzResource Description: Functional annotation for CFLO-BCM_version_0.5.3 protein set based on Cflo_1.0 genome (GCA_000648655.1)
Resource Title: Copidosoma floridanum (parasitoid wasp) annotation.
File Name: CFLO.tar.gz
Resource Description: Functional annotation for CFLO-BCM_version_0.5.3 protein set based on Cflo_1.0 genome (GCA_000648655.1)
Resource Title: Ceratitis capitata (Mediterranean fruit fly) annotation. File Name: CCAP.tar.gzResource Description: Functional annotation for Ccap-OGSv1 protein set based on Ccap_1.1 assembly (GCA_000347755.2)
Resource Title: Ceratitis capitata (Mediterranean fruit fly) annotation.
File Name: CCAP.tar.gz
Resource Description: Functional annotation for Ccap-OGSv1 protein set based on Ccap_1.1 assembly (GCA_000347755.2)
Resource Title: Athalia rosae (turnip sawfly) annotation. File Name: AROS.tar.gzResource Description: Functional annotation for AROS-BCM_version_0.5.3 protein set based on Aros_1.0 genome (GCA_000344095.1)
Resource Title: Athalia rosae (turnip sawfly) annotation.
File Name: AROS.tar.gz
Resource Description: Functional annotation for AROS-BCM_version_0.5.3 protein set based on Aros_1.0 genome (GCA_000344095.1)
Resource Title: Agrilus planipennis (emerald ash borer) annotation. File Name: APLA.tar.gzResource Description: Functional annotation for APLA-BCM_version_0.5.3 protein set based on Apla_1.0 genome (GCA_000699045.1)
Resource Title: Agrilus planipennis (emerald ash borer) annotation.
File Name: APLA.tar.gz
Resource Description: Functional annotation for APLA-BCM_version_0.5.3 protein set based on Apla_1.0 genome (GCA_000699045.1)
Original Distribution URL:
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https://agdatacommons.nal.usda.gov/articles/dataset/Functional_annotation_for_15_diverse_arthropod_genomes/24666159
Scope of Project
Subject Terms:
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gene annotation;
functional annotation;
data.gov;
ARS
Geographic Coverage:
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United States
Time Period(s):
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7/6/2021 – 7/6/2021
Collection Notes:
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DOI: 10.15482/USDA.ADC/1522860
Citation: Saha, Surya; Cooksey, Amanda M.; Childers, Anna K.; Poelchau, Monica F.; McCarthy, Fiona M. (2021). Functional annotation for 15 diverse arthropod genomes. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1522860 (Downloaded 2026-06-26)
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