Data from: Cultivar resistance to common scab disease of potato is dependent on the pathogen species
Principal Investigator(s): View help for Principal Investigator(s) US Department of Agriculture; National Agricultural Library
Version: View help for Version V1
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Project Citation:
US Department of Agriculture, and National Agricultural Library. Data from: Cultivar resistance to common scab disease of potato is dependent on the pathogen species. Ann Arbor, MI: Inter-university Consortium for Political and Social Research [distributor], 2026-06-27. https://doi.org/10.3886/E250355V1
Project Description
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Data from: Cultivar resistance to common scab disease of potato is dependent on the pathogen species
Summary:
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All data from the paper "Cultivar resistance to common scab disease of potato is dependent on the pathogen species." Three separate datasets are included:
A csv file with the disease severity of three common scab pathogens across 55 different potato cultivars in a greenhouse pot assay (Figures 2-5 in the associated paper). The included R script was used with this data to perform the ANOVA for the data from the greenhouse pot assay (Table 2 in the associated paper). This script can be used in R for any similar dataset to calculate the significance and percent of total variation for any number of user-defined fixed effects.
A csv file with the disease severity of three common scab pathogens across 55 different potato cultivars in a greenhouse pot assay (Figures 2-5 in the associated paper). The included R script was used with this data to perform the ANOVA for the data from the greenhouse pot assay (Table 2 in the associated paper). This script can be used in R for any similar dataset to calculate the significance and percent of total variation for any number of user-defined fixed effects.
A zipped file with all of the qPCR data for the expression of the txtAB genes (Figure 6 in the associated paper).
A zipped file with all of the qPCR data for the expression of the txtAB genes (Figure 6 in the associated paper).
An Excel file with the HPLC data for making the thaxtomin detection standard curve and quantifying the amount of thaxtomin in the test sample.
Resources in this dataset:
An Excel file with the HPLC data for making the thaxtomin detection standard curve and quantifying the amount of thaxtomin in the test sample.
Resources in this dataset:
Resource Title: Streptomyces pot assay data. File Name: 18.4.2updatedfileAllDataPotAssay.csvResource Description: Combined data from all Streptomyces - potato pot assays from the paper "Cultivar resistance to common scab disease of potato is dependent on the pathogen species." This csv file can be used with the example R script "DiseaseseverityEstimateScript."
Resource Title: Streptomyces pot assay data.
File Name: 18.4.2updatedfileAllDataPotAssay.csv
Resource Description: Combined data from all Streptomyces - potato pot assays from the paper "Cultivar resistance to common scab disease of potato is dependent on the pathogen species." This csv file can be used with the example R script "DiseaseseverityEstimateScript."
Resource Title: Combined qPCR data.. File Name: CombinedtxtABqPCRresults.zipResource Description: Zipped file that contains all qPCR data of txtAB gene expression in all experimental conditions. Combined qPCR data from Figure 6 of the paper "Cultivar resistance to common scab disease of potato is dependent on the pathogen species."
Resource Title: Combined qPCR data..
File Name: CombinedtxtABqPCRresults.zip
Resource Description: Zipped file that contains all qPCR data of txtAB gene expression in all experimental conditions. Combined qPCR data from Figure 6 of the paper "Cultivar resistance to common scab disease of potato is dependent on the pathogen species."
Resource Title: R script for estimating disease severity. File Name: DiseaseSeverityEstimateScript.txtResource Description: R script used in combination with the "18.4.2updatedfileAllDataPotAssay.csv" file for generating the disease severity estimates (Figures 2-4) in the paper "Combined qPCR data from Figure 6 of the paper "Cultivar resistance to common scab disease of potato is dependent on the pathogen species."
Resource Title: R script for estimating disease severity.
File Name: DiseaseSeverityEstimateScript.txt
Resource Description: R script used in combination with the "18.4.2updatedfileAllDataPotAssay.csv" file for generating the disease severity estimates (Figures 2-4) in the paper "Combined qPCR data from Figure 6 of the paper "Cultivar resistance to common scab disease of potato is dependent on the pathogen species."
Resource Title: Thaxtomin standard curve and quantification - All data. File Name: Thaxtomin_CalCurve_log_log-Scale_12072018 (003).xlsxResource Description: Excel file with two sheets. The first sheet is all of the HPLC data used for calculating the standard curve of thaxtomin using known standards. The second sheet is the quantification data for the abundance of thaxtomin across the experimental groups. Data presented as Figure 6 in the paper "Combined qPCR data from Figure 6 of the paper "Cultivar resistance to common scab disease of potato is dependent on the pathogen species."
Resource Title: Thaxtomin standard curve and quantification - All data.
File Name: Thaxtomin_CalCurve_log_log-Scale_12072018 (003).xlsx
Resource Description: Excel file with two sheets. The first sheet is all of the HPLC data used for calculating the standard curve of thaxtomin using known standards. The second sheet is the quantification data for the abundance of thaxtomin across the experimental groups. Data presented as Figure 6 in the paper "Combined qPCR data from Figure 6 of the paper "Cultivar resistance to common scab disease of potato is dependent on the pathogen species."
A csv file with the disease severity of three common scab pathogens across 55 different potato cultivars in a greenhouse pot assay (Figures 2-5 in the associated paper). The included R script was used with this data to perform the ANOVA for the data from the greenhouse pot assay (Table 2 in the associated paper). This script can be used in R for any similar dataset to calculate the significance and percent of total variation for any number of user-defined fixed effects.
A csv file with the disease severity of three common scab pathogens across 55 different potato cultivars in a greenhouse pot assay (Figures 2-5 in the associated paper). The included R script was used with this data to perform the ANOVA for the data from the greenhouse pot assay (Table 2 in the associated paper). This script can be used in R for any similar dataset to calculate the significance and percent of total variation for any number of user-defined fixed effects.
A zipped file with all of the qPCR data for the expression of the txtAB genes (Figure 6 in the associated paper).
A zipped file with all of the qPCR data for the expression of the txtAB genes (Figure 6 in the associated paper).
An Excel file with the HPLC data for making the thaxtomin detection standard curve and quantifying the amount of thaxtomin in the test sample.
Resources in this dataset:
- Resource Title: Streptomyces pot assay data. File Name: 18.4.2updatedfileAllDataPotAssay.csvResource Description: Combined data from all Streptomyces - potato pot assays from the paper "Cultivar resistance to common scab disease of potato is dependent on the pathogen species." This csv file can be used with the example R script "DiseaseseverityEstimateScript."
- Resource Title: Combined qPCR data.. File Name: CombinedtxtABqPCRresults.zipResource Description: Zipped file that contains all qPCR data of txtAB gene expression in all experimental conditions. Combined qPCR data from Figure 6 of the paper "Cultivar resistance to common scab disease of potato is dependent on the pathogen species."
- Resource Title: R script for estimating disease severity. File Name: DiseaseSeverityEstimateScript.txtResource Description: R script used in combination with the "18.4.2updatedfileAllDataPotAssay.csv" file for generating the disease severity estimates (Figures 2-4) in the paper "Combined qPCR data from Figure 6 of the paper "Cultivar resistance to common scab disease of potato is dependent on the pathogen species."
- Resource Title: Thaxtomin standard curve and quantification - All data. File Name: Thaxtomin_CalCurve_log_log-Scale_12072018 (003).xlsxResource Description: Excel file with two sheets. The first sheet is all of the HPLC data used for calculating the standard curve of thaxtomin using known standards. The second sheet is the quantification data for the abundance of thaxtomin across the experimental groups. Data presented as Figure 6 in the paper "Combined qPCR data from Figure 6 of the paper "Cultivar resistance to common scab disease of potato is dependent on the pathogen species."
An Excel file with the HPLC data for making the thaxtomin detection standard curve and quantifying the amount of thaxtomin in the test sample.
Resources in this dataset:
Resource Title: Streptomyces pot assay data. File Name: 18.4.2updatedfileAllDataPotAssay.csvResource Description: Combined data from all Streptomyces - potato pot assays from the paper "Cultivar resistance to common scab disease of potato is dependent on the pathogen species." This csv file can be used with the example R script "DiseaseseverityEstimateScript."
Resource Title: Streptomyces pot assay data.
File Name: 18.4.2updatedfileAllDataPotAssay.csv
Resource Description: Combined data from all Streptomyces - potato pot assays from the paper "Cultivar resistance to common scab disease of potato is dependent on the pathogen species." This csv file can be used with the example R script "DiseaseseverityEstimateScript."
Resource Title: Combined qPCR data.. File Name: CombinedtxtABqPCRresults.zipResource Description: Zipped file that contains all qPCR data of txtAB gene expression in all experimental conditions. Combined qPCR data from Figure 6 of the paper "Cultivar resistance to common scab disease of potato is dependent on the pathogen species."
Resource Title: Combined qPCR data..
File Name: CombinedtxtABqPCRresults.zip
Resource Description: Zipped file that contains all qPCR data of txtAB gene expression in all experimental conditions. Combined qPCR data from Figure 6 of the paper "Cultivar resistance to common scab disease of potato is dependent on the pathogen species."
Resource Title: R script for estimating disease severity. File Name: DiseaseSeverityEstimateScript.txtResource Description: R script used in combination with the "18.4.2updatedfileAllDataPotAssay.csv" file for generating the disease severity estimates (Figures 2-4) in the paper "Combined qPCR data from Figure 6 of the paper "Cultivar resistance to common scab disease of potato is dependent on the pathogen species."
Resource Title: R script for estimating disease severity.
File Name: DiseaseSeverityEstimateScript.txt
Resource Description: R script used in combination with the "18.4.2updatedfileAllDataPotAssay.csv" file for generating the disease severity estimates (Figures 2-4) in the paper "Combined qPCR data from Figure 6 of the paper "Cultivar resistance to common scab disease of potato is dependent on the pathogen species."
Resource Title: Thaxtomin standard curve and quantification - All data. File Name: Thaxtomin_CalCurve_log_log-Scale_12072018 (003).xlsxResource Description: Excel file with two sheets. The first sheet is all of the HPLC data used for calculating the standard curve of thaxtomin using known standards. The second sheet is the quantification data for the abundance of thaxtomin across the experimental groups. Data presented as Figure 6 in the paper "Combined qPCR data from Figure 6 of the paper "Cultivar resistance to common scab disease of potato is dependent on the pathogen species."
Resource Title: Thaxtomin standard curve and quantification - All data.
File Name: Thaxtomin_CalCurve_log_log-Scale_12072018 (003).xlsx
Resource Description: Excel file with two sheets. The first sheet is all of the HPLC data used for calculating the standard curve of thaxtomin using known standards. The second sheet is the quantification data for the abundance of thaxtomin across the experimental groups. Data presented as Figure 6 in the paper "Combined qPCR data from Figure 6 of the paper "Cultivar resistance to common scab disease of potato is dependent on the pathogen species."
Original Distribution URL:
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https://agdatacommons.nal.usda.gov/articles/dataset/Data_from_Cultivar_resistance_to_common_scab_disease_of_potato_is_dependent_on_the_pathogen_species/24663270
Scope of Project
Subject Terms:
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NP303;
plant pathology;
data.gov;
ARS
Data Type(s):
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program source code
Collection Notes:
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DOI: 10.15482/USDA.ADC/1503703
Citation: Clarke, Christopher R. (2019). Data from: Cultivar resistance to common scab disease of potato is dependent on the pathogen species. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1503703 (Downloaded 2026-06-26)
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