Data from: Draft genome of the rice coral Montipora capitata obtained from linked-read sequencing

Principal Investigator(s):  View help for Principal Investigator(s) US Department of Agriculture; National Agricultural Library

Version:  View help for Version V1

Name File Type Size Last Modified
Mcap_genemodels_1.0.gff text/plain 167.9 MB 06/26/2026 11:44:AM
Mcap_genemodels_1.0_aa.fas text/plain 14.9 MB 06/26/2026 11:44:AM
Mcap_genemodels_1.0_cds.fas text/plain 44.2 MB 06/26/2026 11:44:AM
adc_metadata.json application/json 22.4 KB 06/26/2026 08:10:PM
catalog_detail.html text/html 9.1 KB 06/26/2026 11:44:AM

Project Citation: 

US Department of Agriculture, and National Agricultural Library. Data from: Draft genome of the rice coral Montipora capitata obtained from linked-read sequencing. Ann Arbor, MI: Inter-university Consortium for Political and Social Research [distributor], 2026-06-27. https://doi.org/10.3886/E250351V1

Project Description

Project Title:  View help for Project Title Data from: Draft genome of the rice coral Montipora capitata obtained from linked-read sequencing
Summary:  View help for Summary THIS DATA HAS BEEN UPDATED: PLEASE SEE http://dx.doi.org/10.15482/USDA.ADC/1503958 FOR THE UPDATED VERSION.

Gene models for protein-coding genes in the genome of the rice coral Montipora capitata, Hawaii Island. Annotation was performed with Augustus v3.3.1, using RNA-seq data as extrinsic evidence. Gene structures (.gff), coding sequences (_cds.fas), and amino acid sequences (_aa.fas) are provided.


Resources in this dataset:

Resource Title: Montipora capitata gene models v1.0, amino acid sequence. File Name: Mcap_genemodels_1.0_aa.fas

Resource Title: Montipora capitata gene models v1.0, amino acid sequence.

File Name: Mcap_genemodels_1.0_aa.fas

Resource Title: Montipora capitata gene models v1.0, coding sequence. File Name: Mcap_genemodels_1.0_cds.fas

Resource Title: Montipora capitata gene models v1.0, coding sequence.

File Name: Mcap_genemodels_1.0_cds.fas

Resource Title: Montipora capitata gene models v1.0, gene structure (GFF). File Name: Mcap_genemodels_1.0.gff

Resource Title: Montipora capitata gene models v1.0, gene structure (GFF).

File Name: Mcap_genemodels_1.0.gff
Original Distribution URL:  View help for Original Distribution URL https://agdatacommons.nal.usda.gov/articles/dataset/Data_from_Draft_genome_of_the_rice_coral_Montipora_capitata_obtained_from_linked-read_sequencing/24663012

Scope of Project

Subject Terms:  View help for Subject Terms coral; genome assembly; gene annotation; Montipora capitata; Hawaii; gene models; linked-read sequencing
Collection Notes:  View help for Collection Notes DOI: 10.15482/USDA.ADC/1478412 Citation: Helmkampf, Martin; Bellinger, M. Renee; Geib, Scott M.; Sim, Sheina B.; Takabayashi, Misaki (2018). Data from: Draft genome of the rice coral Montipora capitata obtained from linked-read sequencing. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1478412 (Downloaded 2026-06-26)


Related Publications

Download this project

Published Versions

V1 [2026-06-27]

Export Metadata

Dublin Core

DDI 2.5

Report a Problem

Found a serious problem with the data, such as disclosure risk or copyrighted content? Let us know.

This material is distributed exactly as received from the data depositor. ICPSR has not reviewed, checked, or processed this material. For additional information about the study, please contact the investigator(s) directly. If you have questions about the accessibility of materials distributed by ICPSR or require further assistance, please visit ICPSR's Accessibility Center.