Eurytemora affinis complex (Atlantic clade) genome assembly v1.0
Principal Investigator(s): View help for Principal Investigator(s) US Department of Agriculture; National Agricultural Library
Version: View help for Version V1
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Project Citation:
US Department of Agriculture, and National Agricultural Library. Eurytemora affinis complex (Atlantic clade) genome assembly v1.0. Ann Arbor, MI: Inter-university Consortium for Political and Social Research [distributor], 2026-06-27. https://doi.org/10.3886/E250309V1
Project Description
Project Title:
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Eurytemora affinis complex (Atlantic clade) genome assembly v1.0
Summary:
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The Baylor College of Medicine has sequenced and annotated the Eurytemora affinis complex (Atlantic clade) genome as part of the i5k pilot project. This dataset presents the Eurytemora affinis complex (Atlantic clade) genome v1.0. This assembly version is the pre-release version, prior to filtering and quality control by the National Center for Biotechnology Information's GenBank resource. If you wish to use this dataset, please follow the Baylor College of Medicine's conditions for data use.
Resources in this dataset:
Resource Title: Eurytemora affinis complex (Atlantic clade) genome assembly v1.0. File Name: euraff_BCM_assembly_v1-0.tar.gzResource Description: The attached tar.gz archive (EAFF_BCM_assembly_v1-0.tgz ) contains the following files: Eaff_11172013.contigs.fa.gz. This file contains the sequence information of the contigs of the Eurytemora affinis complex (Atlantic clade) 1.0 assembly. Eaff_11172013.genome.fa. This file contains the sequence information of the scaffolds of the Eurytemora affinis complex (Atlantic clade) 1.0 assembly. Eaff_11172013.genome.agp. This file contains information linking the contigs and scaffolds for this assembly. A description of the agp format is available here: http://www.ncbi.nlm.nih.gov/projects/genome/assembly/agp/AGP_Specification.shtml
Resource Title: Eurytemora affinis complex (Atlantic clade) genome assembly v1.0.
File Name: euraff_BCM_assembly_v1-0.tar.gz
Resource Description:
The attached tar.gz archive (EAFF_BCM_assembly_v1-0.tgz ) contains the following files:
Eaff_11172013.contigs.fa.gz. This file contains the sequence information of the contigs of the Eurytemora affinis complex (Atlantic clade) 1.0 assembly.
Eaff_11172013.genome.fa. This file contains the sequence information of the scaffolds of the Eurytemora affinis complex (Atlantic clade) 1.0 assembly.
Eaff_11172013.genome.agp. This file contains information linking the contigs and scaffolds for this assembly. A description of the agp format is available here: http://www.ncbi.nlm.nih.gov/projects/genome/assembly/agp/AGP_Specification.shtml
Resources in this dataset:
Resource Title: Eurytemora affinis complex (Atlantic clade) genome assembly v1.0. File Name: euraff_BCM_assembly_v1-0.tar.gzResource Description: The attached tar.gz archive (EAFF_BCM_assembly_v1-0.tgz ) contains the following files: Eaff_11172013.contigs.fa.gz. This file contains the sequence information of the contigs of the Eurytemora affinis complex (Atlantic clade) 1.0 assembly. Eaff_11172013.genome.fa. This file contains the sequence information of the scaffolds of the Eurytemora affinis complex (Atlantic clade) 1.0 assembly. Eaff_11172013.genome.agp. This file contains information linking the contigs and scaffolds for this assembly. A description of the agp format is available here: http://www.ncbi.nlm.nih.gov/projects/genome/assembly/agp/AGP_Specification.shtml
Resource Title: Eurytemora affinis complex (Atlantic clade) genome assembly v1.0.
File Name: euraff_BCM_assembly_v1-0.tar.gz
Resource Description:
The attached tar.gz archive (EAFF_BCM_assembly_v1-0.tgz ) contains the following files:
Eaff_11172013.contigs.fa.gz. This file contains the sequence information of the contigs of the Eurytemora affinis complex (Atlantic clade) 1.0 assembly.
Eaff_11172013.genome.fa. This file contains the sequence information of the scaffolds of the Eurytemora affinis complex (Atlantic clade) 1.0 assembly.
Eaff_11172013.genome.agp. This file contains information linking the contigs and scaffolds for this assembly. A description of the agp format is available here: http://www.ncbi.nlm.nih.gov/projects/genome/assembly/agp/AGP_Specification.shtml
Original Distribution URL:
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https://agdatacommons.nal.usda.gov/articles/dataset/Eurytemora_affinis_complex_Atlantic_clade_genome_assembly_v1_0/24662106
Scope of Project
Subject Terms:
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genome assembly;
sequence analysis;
Eurytemora affinis;
Eurytemora affinis complex (Atlantic clade)
Geographic Coverage:
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United States
Time Period(s):
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1/1/2016 – 12/31/2017
Collection Notes:
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DOI: 10.15482/USDA.ADC/1522903
Citation: Lee, Carol E.; Gibbs, Richard A.; Worley, Kim C.; Murali, Shwetha C.; Lee, Sandra L.; Muzny, Donna M.; Chao, Hsu; Dinh, Huyen; Doddapaneni, Harshavardhan; Qu, Jiaxin; Dugan-Perez, Shannon; Han, Yi; Richards, Stephen (2021). Eurytemora affinis complex (Atlantic clade) genome assembly v1.0. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1522903 (Downloaded 2026-06-26)
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