Data from: BBGD: an online database for blueberry genomic data

Principal Investigator(s):  View help for Principal Investigator(s) US Department of Agriculture; National Agricultural Library

Version:  View help for Version V1

Name File Type Size Last Modified
1471-2229-7-5-s1.xls application/vnd.ms-excel 662.5 KB 06/26/2026 12:09:PM
BBGD-data-dictionary.csv text/csv 356 bytes 06/26/2026 11:08:AM
adc_metadata.json application/json 27.9 KB 06/26/2026 11:08:AM
catalog_detail.html text/html 31.2 KB 06/26/2026 11:08:AM

Project Citation: 

US Department of Agriculture, and National Agricultural Library. Data from: BBGD: an online database for blueberry genomic data. Ann Arbor, MI: Inter-university Consortium for Political and Social Research [distributor], 2026-06-26. https://doi.org/10.3886/E250214V1

Project Description

Project Title:  View help for Project Title Data from: BBGD: an online database for blueberry genomic data
Summary:  View help for Summary This dataset is supplemental to the article "BBGD: an online database for blueberry genomic data," (2007); it is titled "list of genes printed on microarray slides."

The article, "BBGD: an online database for blueberry genomic data," (2007) involving blueberry cold hardiness experiments has a list of all the genes that were printed on microarray slides. This dataset, supplemental to the article, is called: "list of genes printed on microarray slides." 1471-2229-7-5-s1.xls 663k. By using the BBGD database, researchers developed EST-based markers for mapping, and have identified a number of "candidate" cold tolerance genes that are highly expressed in blueberry flower buds after exposure to low temperatures. BBGD (http://bioinformatics.towson.edu/BBGD/) is a public online database, and was developed for blueberry genomics. BBGD is both a sequence and gene expression database: it stores both EST and microarray data, and allows scientists to correlate expression profiles with gene function. Presently, the main focus of the database is the identification of genes in blueberry that are significantly induced or suppressed after low temperature exposure.

Data was collected sometime between 2000 and 2007 - exact dates are unknown.


Resources in this dataset:

Resource Title: List of genes printed on microarray slides, 1471-2229-7-5-s1.xls. File Name: 1471-2229-7-5-s1.xls

Resource Title: List of genes printed on microarray slides, 1471-2229-7-5-s1.xls.

File Name: 1471-2229-7-5-s1.xls

Resource Title: Data dictionary. File Name: BBGD-data-dictionary.csvResource Description: Defines fields for list of genes.

Resource Title: Data dictionary.

File Name: BBGD-data-dictionary.csv

Resource Description: Defines fields for list of genes.
Original Distribution URL:  View help for Original Distribution URL https://agdatacommons.nal.usda.gov/articles/dataset/Data_from_BBGD_an_online_database_for_blueberry_genomic_data/24660177

Scope of Project

Subject Terms:  View help for Subject Terms blueberry; BBGD; genomics; NP301; Online database; data.gov; ARS
Geographic Coverage:  View help for Geographic Coverage United States
Time Period(s):  View help for Time Period(s) 1/1/2000 – 12/31/2007
Data Type(s):  View help for Data Type(s) observational data
Collection Notes:  View help for Collection Notes DOI: 10.15482/USDA.ADC/1173243 Citation: Alkharouf, Nadim W.; Dhanaraj, Anik L.; Naik, Dhananjay; Overall, Christopher; Matthews, Benjamin F.; Rowland, Lisa J. (2015). Data from: BBGD: an online database for blueberry genomic data. BMC Plant Biology. https://doi.org/10.15482/USDA.ADC/1173243 (Downloaded 2026-06-26)


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Published Versions

V1 [2026-06-26]

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